News

Observ-OM data model published

Observ-OM and Observ-TAB, the Universal syntax solutions for the integration, search, and exchange of phenotype and genotype information, is published in  Human Mutation. Genetic and epidemiological resear ...

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• Posted: 2012-04-06 10:34
• Author: mswertz
• Categories: observ molgenis
• Comments (0)

CHD7 mutation database published

We are proud with another  MOLGENIS for the CHARGE syndrome using  Observ-OM published in  Human Mutation. CHD7 is a member of the chromodomain helicase DNA- ...

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• Posted: 2012-04-06 10:26 (Updated: 2012-04-06 10:31)
• Author: mswertz
• Categories: observ molgenis
• Comments (0)

xQTL workbench paper published

See  http://bioinformatics.oxfordjournals.org/content/28/7/1042. QTL workbench is a scalable web platform for the mapping of quantitative trait loci (QTLs) at multiple levels: for example gene expression (eQTL), protein abundance (pQTL), metabolite ab ...

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• Posted: 2012-03-31 15:57 (Updated: 2012-03-31 15:58)
• Author: mswertz
• Categories: xgap molgenis
• Comments (0)

GenomeNL variation database

The first version of the GenomeNL database is online. Now researchers can already sneak peak the GoNL variant data to verify whether variants observed in their own sample are unique against 25 million SNPs observed in the panel of 500 parents. By Ap ...

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• Posted: 2012-02-20 22:03
• Author: mswertz
• Categories: (none)
• Comments (0)

OntoCAT easy ontology search

With so many ontocat papers published  NBIC has made a newsitem on OntoCAT! n annotating life sciences data, ontologies are quickly gaining im ...

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• Posted: 2011-12-14 22:30
• Author: mswertz
• Categories: (none)
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Welcome to MOLGENIS

MOLGENIS is an collaborative open source project on a mission to generate great software infrastructure for life science research. Each app in the MOLGENIS family comes with rich data management interface and plug-in integration of analysis tools in R, Java and web services.

Using the software

MOLGENIS applications:

• xQTL Workbench for multi-level QTL mapping (project)
• Dystrophic Epidermolysis Bullosa (deb-central) mutation database ( project,  publication)
• eXtensible Genotype and Phenotype database (XGAP) (project,  publication)
• Design of Genetical Genomics Experiments (designGG)] ( project,  publication)
• BBMRI-NL biobank catalague ( project)
• MAGE-TAB microarray gene experiment object model (MAGETAB-OM)] ( project,  demo)
• Pheno-OM Phenotype observation model (project,  demo)
• Mouse Resource Browser (MRB) project] ( project,  publication)
• MOLGENIS as data wrapper in Taverna ( publication)
• Animal observation database (AnimalDB) ( project)
• Nordic GWAS control database ( project,  publication)
• GWAS Central curation tool ( project)
• Finnish disease database (FINDIS) ( project)
• Bacterial microarrays database (MOLGEN-IS) ( publication)
• Human Metabolic Pathway Database ( project,  publication)

If you think your project should be listed (differently) please let us know

Developing your own

Generate generate your own in three steps:

1. Model what you want for your experiment in a simple XML file  example db,  example ui
2. Run the MOLGENIS generator
3. Use your web application  example.

See

•  MOLGENIS tutorial
• MolgenisGuide -- How to generate your own MOLGENIS
• MolgenisApps -- Our app suite [in development]
• MolgenisFaq -- Frequently asked questions about MOLGENIS and its use
• MolgenisGoogleGroup -- Join our Googlegroup mail forum for all things around MOLGENIS

Partners

The MOLGENIS project is supported by the University Medical Center Groningen  UMCG, Groningen Bioinformatics Center  GBIC, European Bioinformatics Institute  EBI and the Netherlands Bioinformatics Center  NBIC.